Troubleshooting Deformed Beets and Reasons Why Beets Are Too Small

Growing beets is an exercise in faith.

You work for weeks or months to nurture those little seedlings into hopefully vigorous roots.

In the end, you’re rewarded with a crop of vibrant veggies that you believed all along were there, even though you couldn’t see them.

At least, that’s what happens when everything goes according to plan.

In the real world, this process isn’t always so perfect. Sometimes things go wrong, and when you shovel up your harvest from the earth, you may find that your beets weren’t growing as you’d expected under that little blanket of soil.

A vertical close up picture of a beet growing in the garden with green tops and purple stalks, surrounded by dry soil. To the center and bottom of the frame is green and white printed text.

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Your roots may be too small, or they may be oddly shaped or deformed, despite the fact that the leaves may have looked perfectly happy above ground.

Sometimes, that’s the mystery of root crops. But we hope to shed some light on the situation so you can set yourself up for a rewarding harvest rather than a disappointing one.

Here’s what’s ahead:

I know it’s frustrating to put all that effort in, only to be denied the crop you’d planned on.

The good news is, if you make a mistake and you’re able to learn from it, you rarely have to deal with the same issue again.

Get ready to learn all about why your beets were deformed or small, and what to do about it.

A Bit About Beets

Beets are one of those plants that even the newest gardener can often master. Perhaps that’s why it’s so annoying when they don’t turn out like you expected.

A close up horizontal image of a pile of freshly harvested Beta vulgaris roots set on a wooden surface surrounded by soil.

You hear about how simple they are to grow, only to discover that you failed at it – which might make you question this whole gardening endeavor.

Trust me, I’ve been there. But part of what makes gardening so rewarding is learning and overcoming obstacles.

So, let’s talk about fundamentals. Beets need about 60 days to mature, depending on the variety, which means there isn’t a lot of time for things to go wrong.

But it also means you don’t have much time to fix the problem if something isn’t right.

In order to be successful, you need to prepare well and keep a close eye on things.

To give yourself a fighting chance, check out our article on how to grow beets for all the best advice.

If you’re growing your beets in a container, not to worry, we have you covered there, too.

Essentially, beets like cool weather, well-draining and loose soil, and lots of sun.

Many problems can be avoided if you take the time to set your garden up for success before you put the first seed in the soil.

Reasons for Healthy Tops with Small or Deformed Roots

It’s aggravating when a plant looks perfectly happy, but below ground, there’s trouble brewing.

A close up horizontal image of a row of Beta vulgaris with healthy green tops growing in the garden in dark rich soil.

You can’t do anything to fix the situation, since you don’t know there’s a problem in the first place.

If everything looks good above ground, but your beets look surprisingly small when you harvest them, there are a few common potential culprits:


If your beets were planted too close together, the roots won’t be able to spread.

Imagine a big, round beet as it gradually matures, only it bumps up against its neighbor with nowhere else to grow.

I know it’s tempting to try and squeeze in as many plants as possible into a space, but you need to give beets plenty of room.

You should sow your seeds or transplant seedlings with at least three inches between them and 12 inches between rows.

Compacted Soil

If your soil is too compacted, just as with crowded plants, your beets won’t be able to expand as they grow.

That’s why it’s imperative to work in some well-rotted compost or manure to the planting area if you are working with clay or hard soil.

Truper Tru Tough Spading Fork

Regardless of your soil type, you should use a fork like this one, available on Amazon, to dig up and loosen the soil down to nine inches before planting.

A little bit of prep work will go a long way.

Nutrient Deficiency

Beets need lots of phosphorus to grow to the mature size that you’re aiming for. If they don’t have enough, they may grow healthy-looking tops with underdeveloped roots.

Test your soil before planting and if you find that it’s deficient, work some bone meal into the soil, following the manufacturer’s directions.

A phosphorus deficiency is far less common than overcrowding and compacted soil, so don’t just assume that’s the problem and toss some fertilizer at it.

This can cause a host of other problems.


If you have rocky soil, your beets may be forced to grow around any rock that’s in the way.

This can cause them to have smaller size at maturity than what they could have attained in more suitable soil, or it can cause them to grow in odd shapes.

To avoid this, be sure to dig down nine inches into the soil and remove any rocks you can find before planting.

Troubleshooting Small or Deformed Roots and Unhealthy Greens

Sometimes you will see evidence of a problem both below and above ground.

The good news about finding deformed roots along with obviously unhealthy greens above ground is that you are likely to observe that something is wrong more quickly, before it’s time to harvest.

A close up horizontal image of three Beta vulgaris roots of different shapes and sizes set on a wooden surface.

You may also have enough time to fix the problem before it’s too late for your roots.

Not Enough Sun

Beets benefit from plenty of sun, and if they don’t get enough, their roots can be malformed. Usually, the tops will be smaller than usual and they may also be leggy or lighter in color.

The fix, of course, is to plant your beets where they can get at least six hours of light per day. This is one of those situations that you may be able to address if you notice the problem soon enough.

If you planted near a tree or bush that filled out as the season progressed, you can prune the plant back to restore light access to your garden.

If your beets are growing in a container, move it to a better spot.

Acidic Soil

Beets prefer slightly alkaline or neutral soil. If the pH drops below 6.5, the acidity can cause phosphorus to become less available, resulting in misshapen roots.

If your beets also develop red or purplish tips on the leaves, that’s a definite sign that you need to test your soil and adjust the pH accordingly.

You can make your soil more alkaline by adding lime according to the recommendations in your test results or on the package.

Not Enough Water

If you notice cracks in your beet roots, it likely means that they didn’t get enough water at the right time. If they experienced any drought while growing or inconsistent water, cracking often results.

You may be able to see if your plants are struggling with dehydration if you notice the tops starting to droop or turn yellow.

To avoid this, be sure to give plants water regularly and don’t let them dry out completely. The soil should feel moist, like a well-wrung-out sponge.

If you stick your finger in the dirt and it feels dry past one inch, it’s time to get out the hose. Water at the soil level rather than sprinkling the foliage.

Pests and Diseases to Watch For

On top of these common planting issues, deformed or small roots can be the result of an insect infestation or disease.


We have an entire guide dedicated to figuring out what’s bugging your beet plants and how to deal with it , so we’ll just touch on what to watch for here.


If the tops of your beets seem to be stunted, along with the roots themselves, get out your magnifying glass and look for aphids.

There are a handful of aphids from the Myzus and Aphis genera that will attack beets, and in large enough numbers, all of them can stunt growth.

Look for tiny green, brown, yellow, or tan insects congregating on the underside of leaves.


When it comes to small or deformed beets, if you’ve checked everything else out, you may have nematodes (Meloidogyne) in your soil.

Nematodes can cause the roots to be stunted, hairy, and/or small.


Beets may suffer from several types of diseases, but there are two in particular to watch for that can cause roots to be stunted or misshapen.

Check out our guide to beet diseases to learn more.

Downy Mildew

Downy mildew can cause roots to be misshapen and to have rough skin. Downy mildew is caused by the water mold or oomycete Peronospora farinosa.

Above ground, you’ll notice gray mold on leaves and large, light green spots.

Root Rot

Root rot causes roots to be misshapen or to have a dry, black center.

It’s caused by the pathogen Rhizoctonia crocorum, which also causes the leaves to wilt or turn yellow or brown. Like the roots, they may also be distorted or small.

Don’t Be Afraid to Dig In!

Unless a disease or pest has ruined your roots, don’t be afraid to cook up those spindly or quirky beets. They may not be the picture perfect veggies that you imagined, but most of the time they will still taste just as good.

A close up horizontal image of two hands from the left of the frame holding freshly harvested beet roots of various sizes.

Don’t let a negative experience turn you off of beet gardening, either. Look at this experience as a learning opportunity and try again next year (or later in the same year, if you have enough growing time left).

Be sure to come back here and share your own experiences in the comments below, so future beet growers can learn too!

And for more information about growing beets in your garden, check out these guides next:

Photo of author
Kristine Lofgren is a writer, photographer, reader, and gardening lover from outside Portland, Oregon. She was raised in the Utah desert, and made her way to the rainforests of the Pacific Northwest with her husband and two dogs in 2018. Her passion is focused these days on growing ornamental edibles, and foraging for food in the urban and suburban landscape.

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Rayan8888 (@guest_11213)
3 years ago

Thanks for sharing. Timely as I’m just getting into planting beet root.